HL_6EK0_109

3D structure

PDB id

6EK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

6EK0|1|S2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EK0_109 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.1144

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

6EK0|1|S2|G|1366
6EK0|1|S2|U|1367
6EK0|1|S2|U|1368
6EK0|1|S2|A|1369
6EK0|1|S2|A|1370
6EK0|1|S2|U|1371
6EK0|1|S2|U|1372
6EK0|1|S2|C|1373

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SR

40S ribosomal protein S17