HL_6ELZ_037

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_037 not in the Motif Atlas

Homologous match to HL_5TBW_038

Geometric discrepancy: 0.1377

The information below is about HL_5TBW_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6ELZ|1|1|G|1719
6ELZ|1|1|U|1720
6ELZ|1|1|U|1721
6ELZ|1|1|U|1722
6ELZ|1|1|A|1723
6ELZ|1|1|U|1724
6ELZ|1|1|C|1725

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain I

Nucleolar complex-associated protein 3

Chain R

60S ribosomal protein L19-A