HL_6ELZ_040

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUGAACAGC

Length

9 nucleotides

Bulged bases

6ELZ|1|1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_040 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.2908

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6ELZ|1|1|G|1861
6ELZ|1|1|U|1862
6ELZ|1|1|G|1863
6ELZ|1|1|A|1864
6ELZ|1|1|A|1865
6ELZ|1|1|C|1866
6ELZ|1|1|A|1867
6ELZ|1|1|G|1868
6ELZ|1|1|C|1869

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain R

60S ribosomal protein L19-A