HL_6ELZ_057

3D structure

PDB id

6ELZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S ribosmes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CACAUUG

Length

7 nucleotides

Bulged bases

6ELZ|1|2|A|111, 6ELZ|1|2|U|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ELZ_057 not in the Motif Atlas

Homologous match to HL_5TBW_075

Geometric discrepancy: 0.182

The information below is about HL_5TBW_075

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22523.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

6ELZ|1|2|C|108
6ELZ|1|2|A|109
6ELZ|1|2|C|110
6ELZ|1|2|A|111
6ELZ|1|2|U|112
6ELZ|1|2|U|113
6ELZ|1|2|G|114

Current chains

Chain 2

5.8S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain X

60S ribosomal protein L25

Chain j

60S ribosomal protein L37-A