HL_6EM1_004

3D structure

PDB id

6EM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

6EM1|1|1|U|133, 6EM1|1|1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EM1_004 not in the Motif Atlas

Homologous match to HL_5TBW_004

Geometric discrepancy: 0.1405

The information below is about HL_5TBW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

6EM1|1|1|C|132
6EM1|1|1|U|133
6EM1|1|1|U|134
6EM1|1|1|C|135
6EM1|1|1|G|136

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A