3D structure

PDB id
6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CUUCG
Length
5 nucleotides
Bulged bases
6EM1|1|1|U|133, 6EM1|1|1|C|135
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6EM1_004 not in the Motif Atlas
Homologous match to HL_5TBW_004
Geometric discrepancy: 0.1405
The information below is about HL_5TBW_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_86929.1
Basepair signature
cWW-F
Number of instances in this motif group
9

Unit IDs

6EM1|1|1|C|132
6EM1|1|1|U|133
6EM1|1|1|U|134
6EM1|1|1|C|135
6EM1|1|1|G|136

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain N
60S ribosomal protein L15-A
Chain h
60S ribosomal protein L35-A

Coloring options:


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