HL_6EM1_041
3D structure
- PDB id
- 6EM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- State C (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of nucleolar pre-60S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 6EM1|1|2|U|82, 6EM1|1|2|C|84, 6EM1|1|2|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EM1_041 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.5745
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6EM1|1|2|U|69
6EM1|1|2|G|70
6EM1|1|2|A|71
6EM1|1|2|A|72
6EM1|1|2|U|73
6EM1|1|2|U|74
6EM1|1|2|G|75
6EM1|1|2|C|76
6EM1|1|2|A|77
6EM1|1|2|G|78
6EM1|1|2|A|79
6EM1|1|2|A|80
6EM1|1|2|U|81
6EM1|1|2|U|82
6EM1|1|2|C|83
6EM1|1|2|C|84
6EM1|1|2|G|85
6EM1|1|2|U|86
6EM1|1|2|G|87
6EM1|1|2|A|88
6EM1|1|2|A|89
Current chains
- Chain 2
- 5.8S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
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