HL_6EML_002

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAUUUAUACAG

Length

12 nucleotides

Bulged bases

6EML|1|2|U|73, 6EML|1|2|U|74, 6EML|1|2|U|77

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EML_002 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2143

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6EML|1|2|C|70
6EML|1|2|A|71
6EML|1|2|A|72
6EML|1|2|U|73
6EML|1|2|U|74
6EML|1|2|U|75
6EML|1|2|A|76
6EML|1|2|U|77
6EML|1|2|A|78
6EML|1|2|C|79
6EML|1|2|A|80
6EML|1|2|G|81

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A