HL_6EML_009
3D structure
- PDB id
- 6EML (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- 6EML|1|2|A|369
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6EML_009 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.1721
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
6EML|1|2|U|368
6EML|1|2|A|369
6EML|1|2|A|370
6EML|1|2|G|371
6EML|1|2|G|372
6EML|1|2|G|373
Current chains
- Chain 2
- pre-18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S2
- Chain W
- 40S ribosomal protein S9-A
- Chain X
- 40S ribosomal protein S11-A
- Chain b
- 40S ribosomal protein S22-A
- Chain c
- 40S ribosomal protein S23-A
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