HL_6EML_032

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AUUGUAAUUAUU

Length

12 nucleotides

Bulged bases

6EML|1|2|A|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EML_032 not in the Motif Atlas

Homologous match to HL_4V88_219

Geometric discrepancy: 0.1713

The information below is about HL_4V88_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

6EML|1|2|A|1550
6EML|1|2|U|1551
6EML|1|2|U|1552
6EML|1|2|G|1553
6EML|1|2|U|1554
6EML|1|2|A|1555
6EML|1|2|A|1556
6EML|1|2|U|1557
6EML|1|2|U|1558
6EML|1|2|A|1559
6EML|1|2|U|1560
6EML|1|2|U|1561

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S15

Chain H

40S ribosomal protein S18-A

Chain I

40S ribosomal protein S19-A