HL_6EML_034

3D structure

PDB id

6EML (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late pre-40S ribosomal subunit from Saccharomyces cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAGAGAUCUCAGA

Length

14 nucleotides

Bulged bases

6EML|1|2|A|1693, 6EML|1|2|U|1708

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EML_034 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2365

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6EML|1|2|U|1687
6EML|1|2|U|1688
6EML|1|2|A|1689
6EML|1|2|G|1690
6EML|1|2|A|1691
6EML|1|2|G|1692
6EML|1|2|A|1693
6EML|1|2|U|1708
6EML|1|2|C|1709
6EML|1|2|U|1710
6EML|1|2|C|1711
6EML|1|2|A|1712
6EML|1|2|G|1713
6EML|1|2|A|1714

Current chains

Chain 2

pre-18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A