HL_6ENF_077

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ENF_077 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1365

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ENF|1|a|A|320
6ENF|1|a|A|321
6ENF|1|a|C|322
6ENF|1|a|U|323
6ENF|1|a|G|324
6ENF|1|a|A|325
6ENF|1|a|G|326
6ENF|1|a|A|327
6ENF|1|a|C|328
6ENF|1|a|A|329
6ENF|1|a|C|330
6ENF|1|a|G|331
6ENF|1|a|G|332
6ENF|1|a|U|333

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20