HL_6ENF_102

3D structure

PDB id

6ENF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

6ENF|1|x|C|16, 6ENF|1|x|G|18, 6ENF|1|x|G|19, 6ENF|1|x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ENF_102 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.1692

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ENF|1|x|C|13
6ENF|1|x|A|14
6ENF|1|x|G|15
6ENF|1|x|C|16
6ENF|1|x|C|17
6ENF|1|x|U|17|||A
6ENF|1|x|G|18
6ENF|1|x|G|19
6ENF|1|x|U|20
6ENF|1|x|A|21
6ENF|1|x|G|22

Current chains

Chain x

proline tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5