HL_6ERI_010

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGAGUG

Length

7 nucleotides

Bulged bases

6ERI|1|AA|G|316, 6ERI|1|AA|U|320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_010 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.3466

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6ERI|1|AA|U|315
6ERI|1|AA|G|316
6ERI|1|AA|G|317
6ERI|1|AA|A|318
6ERI|1|AA|G|319
6ERI|1|AA|U|320
6ERI|1|AA|G|321

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AU

50S ribosomal protein L24, chloroplastic