HL_6ERI_012

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAAGUC

Length

9 nucleotides

Bulged bases

6ERI|1|AA|G|338, 6ERI|1|AA|A|339, 6ERI|1|AA|A|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0973

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

6ERI|1|AA|G|336
6ERI|1|AA|U|337
6ERI|1|AA|G|338
6ERI|1|AA|A|339
6ERI|1|AA|A|340
6ERI|1|AA|A|341
6ERI|1|AA|G|342
6ERI|1|AA|U|343
6ERI|1|AA|C|344

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4, chloroplastic

Chain AU

50S ribosomal protein L24, chloroplastic