HL_6ERI_013

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGCACGUGGAAUC

Length

13 nucleotides

Bulged bases

6ERI|1|AA|G|398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_013 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.1762

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6ERI|1|AA|G|393
6ERI|1|AA|G|394
6ERI|1|AA|C|395
6ERI|1|AA|A|396
6ERI|1|AA|C|397
6ERI|1|AA|G|398
6ERI|1|AA|U|399
6ERI|1|AA|G|400
6ERI|1|AA|G|401
6ERI|1|AA|A|402
6ERI|1|AA|A|403
6ERI|1|AA|U|404
6ERI|1|AA|C|405

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AX

50S ribosomal protein L28, chloroplastic