HL_6ERI_022

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUGAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_022 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.1517

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ERI|1|AA|G|723
6ERI|1|AA|G|724
6ERI|1|AA|U|725
6ERI|1|AA|G|726
6ERI|1|AA|A|727
6ERI|1|AA|A|728
6ERI|1|AA|A|729
6ERI|1|AA|C|730

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BO

30S ribosomal protein S15, chloroplastic