HL_6ERI_028

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

6ERI|1|AA|U|986, 6ERI|1|AA|G|989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_028 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0872

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6ERI|1|AA|G|983
6ERI|1|AA|G|984
6ERI|1|AA|A|985
6ERI|1|AA|U|986
6ERI|1|AA|A|987
6ERI|1|AA|A|988
6ERI|1|AA|G|989
6ERI|1|AA|C|990

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain Af

50S ribosomal protein 6, chloroplastic

Chain Ax

5S ribosomal RNA; 5S rRNA