HL_6ERI_034

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_034 not in the Motif Atlas

Homologous match to HL_7RQB_033

Geometric discrepancy: 0.1111

The information below is about HL_7RQB_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

6ERI|1|AA|G|1302
6ERI|1|AA|U|1303
6ERI|1|AA|G|1304
6ERI|1|AA|A|1305
6ERI|1|AA|G|1306
6ERI|1|AA|A|1307
6ERI|1|AA|A|1308
6ERI|1|AA|U|1309
6ERI|1|AA|C|1310

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L17, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic