HL_6ERI_035

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUCGUC

Length

7 nucleotides

Bulged bases

6ERI|1|AA|U|1346, 6ERI|1|AA|U|1350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_035 not in the Motif Atlas

Homologous match to HL_7RQB_034

Geometric discrepancy: 0.1225

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

6ERI|1|AA|G|1345
6ERI|1|AA|U|1346
6ERI|1|AA|U|1347
6ERI|1|AA|C|1348
6ERI|1|AA|G|1349
6ERI|1|AA|U|1350
6ERI|1|AA|C|1351

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L17, chloroplastic

Chain AS

50S ribosomal protein L22, chloroplastic