HL_6ERI_037

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAUAUUC

Length

10 nucleotides

Bulged bases

6ERI|1|AA|U|1417, 6ERI|1|AA|U|1418

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_037 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.4428

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6ERI|1|AA|G|1410
6ERI|1|AA|U|1411
6ERI|1|AA|G|1412
6ERI|1|AA|A|1413
6ERI|1|AA|A|1414
6ERI|1|AA|U|1415
6ERI|1|AA|A|1416
6ERI|1|AA|U|1417
6ERI|1|AA|U|1418
6ERI|1|AA|C|1419

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AT

50S ribosomal protein L23, chloroplastic

Chain Aw

50S ribosomal protein 5 alpha, chloroplastic