HL_6ERI_050

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

6ERI|1|AA|A|1927

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_050 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1724

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ERI|1|AA|G|1924
6ERI|1|AA|U|1925
6ERI|1|AA|A|1926
6ERI|1|AA|A|1927
6ERI|1|AA|C|1928
6ERI|1|AA|U|1929
6ERI|1|AA|A|1930
6ERI|1|AA|U|1931
6ERI|1|AA|A|1932
6ERI|1|AA|A|1933
6ERI|1|AA|C|1934

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain Az

Ribosome-recycling factor, chloroplastic

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BV

Ribosome-binding factor PSRP1, chloroplastic