HL_6ERI_051

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

6ERI|1|AA|U|1969

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_051 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.1106

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

6ERI|1|AA|G|1963
6ERI|1|AA|G|1964
6ERI|1|AA|U|1965
6ERI|1|AA|A|1966
6ERI|1|AA|A|1967
6ERI|1|AA|G|1968
6ERI|1|AA|U|1969
6ERI|1|AA|U|1970
6ERI|1|AA|C|1971

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L14, chloroplastic

Chain Az

Ribosome-recycling factor, chloroplastic

Chain BA

Small subunit ribosomal RNA; SSU rRNA