HL_6ERI_052

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

6ERI|1|AA|A|2044, 6ERI|1|AA|A|2045, 6ERI|1|AA|G|2046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_052 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.1291

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

6ERI|1|AA|G|2041
6ERI|1|AA|U|2042
6ERI|1|AA|G|2043
6ERI|1|AA|A|2044
6ERI|1|AA|A|2045
6ERI|1|AA|G|2046
6ERI|1|AA|A|2047
6ERI|1|AA|U|2048
6ERI|1|AA|G|2049
6ERI|1|AA|C|2050

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L3, chloroplastic

Chain Aa

50S ribosomal protein L32, chloroplastic

Chain Af

50S ribosomal protein 6, chloroplastic