HL_6ERI_056

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6ERI|1|AA|A|2285, 6ERI|1|AA|C|2292

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_056 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0872

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

6ERI|1|AA|C|2281
6ERI|1|AA|C|2282
6ERI|1|AA|A|2283
6ERI|1|AA|A|2284
6ERI|1|AA|A|2285
6ERI|1|AA|A|2286
6ERI|1|AA|G|2287
6ERI|1|AA|G|2288
6ERI|1|AA|U|2289
6ERI|1|AA|A|2290
6ERI|1|AA|A|2291
6ERI|1|AA|C|2292
6ERI|1|AA|G|2293

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AM

50S ribosomal protein L16, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic