HL_6ERI_059

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCCACCCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_059 not in the Motif Atlas

Homologous match to HL_4WF9_053

Geometric discrepancy: 0.1838

The information below is about HL_4WF9_053

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6ERI|1|AA|C|2372
6ERI|1|AA|C|2373
6ERI|1|AA|C|2374
6ERI|1|AA|A|2375
6ERI|1|AA|C|2376
6ERI|1|AA|C|2377
6ERI|1|AA|C|2378
6ERI|1|AA|G|2379

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L15, chloroplastic

Chain AW

50S ribosomal protein L27, chloroplastic

Chain Ad

50S ribosomal protein L35, chloroplastic