HL_6ERI_063

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGUAGUAUG

Length

10 nucleotides

Bulged bases

6ERI|1|AA|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_063 not in the Motif Atlas

Geometric match to HL_4V9F_019

Geometric discrepancy: 0.358

The information below is about HL_4V9F_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42293.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

6ERI|1|AA|C|2544
6ERI|1|AA|U|2545
6ERI|1|AA|G|2546
6ERI|1|AA|U|2547
6ERI|1|AA|A|2548
6ERI|1|AA|G|2549
6ERI|1|AA|U|2550
6ERI|1|AA|A|2551
6ERI|1|AA|U|2552
6ERI|1|AA|G|2553

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AG

50S ribosomal protein L6, chloroplastic

Chain Ae

50S ribosomal protein L36, chloroplastic