HL_6ERI_078

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUAAUAGC

Length

9 nucleotides

Bulged bases

6ERI|1|BA|G|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_078 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1194

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6ERI|1|BA|G|231
6ERI|1|BA|G|232
6ERI|1|BA|U|233
6ERI|1|BA|A|234
6ERI|1|BA|A|235
6ERI|1|BA|U|236
6ERI|1|BA|A|237
6ERI|1|BA|G|238
6ERI|1|BA|C|239

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BQ

30S ribosomal protein S17, chloroplastic

Chain BT

30S ribosomal protein S20, chloroplastic