HL_6ERI_079

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_079 not in the Motif Atlas

Homologous match to HL_5J7L_007

Geometric discrepancy: 0.2008

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6ERI|1|BA|C|268
6ERI|1|BA|G|269
6ERI|1|BA|A|270
6ERI|1|BA|G|271
6ERI|1|BA|A|272
6ERI|1|BA|G|273

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4, chloroplastic

Chain BE

30S ribosomal protein S5, chloroplastic

Chain BH

30S ribosomal protein S8, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic