HL_6ERI_093

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAUGCAAAGC

Length

10 nucleotides

Bulged bases

6ERI|1|BA|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_093 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1496

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6ERI|1|BA|G|913
6ERI|1|BA|A|914
6ERI|1|BA|U|915
6ERI|1|BA|G|916
6ERI|1|BA|C|917
6ERI|1|BA|A|918
6ERI|1|BA|A|919
6ERI|1|BA|A|920
6ERI|1|BA|G|921
6ERI|1|BA|C|922

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BI

30S ribosomal protein S9, chloroplastic

Chain BJ

30S ribosomal protein S10 alpha, chloroplastic

Chain BV

Ribosome-binding factor PSRP1, chloroplastic