HL_6ERI_097

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

6ERI|1|BA|G|1044

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6ERI_097 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1031

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

22

Unit IDs

6ERI|1|BA|G|1039
6ERI|1|BA|U|1040
6ERI|1|BA|U|1041
6ERI|1|BA|A|1042
6ERI|1|BA|A|1043
6ERI|1|BA|G|1044
6ERI|1|BA|U|1045
6ERI|1|BA|C|1046

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S ribosomal protein S2, chloroplastic

Chain BG

30S ribosomal protein S7, chloroplastic