HL_6EZ0_023

3D structure

PDB id

6EZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

(U37)G(U37)AAA

Length

6 nucleotides

Bulged bases

6EZ0|3|A|U37|13

QA status

Modified nucleotides: U37

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6EZ0_023 not in the Motif Atlas

Geometric match to HL_8HNT_002

Geometric discrepancy: 0.3315

The information below is about HL_8HNT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56676.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

6EZ0|3|A|U37|11
6EZ0|3|A|G|12
6EZ0|3|A|U37|13
6EZ0|3|A|A|14
6EZ0|3|A|A|15
6EZ0|3|A|A|16

Current chains

Chain A

RNA (27-MER)

Nearby chains