HL_6FAI_019

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FAI_019 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2535

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6FAI|1|2|A|829
6FAI|1|2|U|830
6FAI|1|2|U|831
6FAI|1|2|U|832
6FAI|1|2|U|833
6FAI|1|2|G|834
6FAI|1|2|U|835
6FAI|1|2|U|836
6FAI|1|2|G|837
6FAI|1|2|G|838
6FAI|1|2|U|839
6FAI|1|2|U|840
6FAI|1|2|U|841
6FAI|1|2|C|842
6FAI|1|2|U|843

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain L

40S ribosomal protein S11-A