HL_6FEC_005

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CAGCGGCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_005 not in the Motif Atlas

Geometric match to HL_5CCB_002

Geometric discrepancy: 0.3118

The information below is about HL_5CCB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.5

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

6FEC|1|A|C|240
6FEC|1|A|A|241
6FEC|1|A|G|242
6FEC|1|A|C|243
6FEC|1|A|G|267
6FEC|1|A|G|268
6FEC|1|A|C|269
6FEC|1|A|G|270

Current chains

Chain A

18S ribosomal RNA

Nearby chains