HL_6FEC_013

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_013 not in the Motif Atlas

Geometric match to HL_4W90_003

Geometric discrepancy: 0.1945

The information below is about HL_4W90_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6FEC|1|A|C|529
6FEC|1|A|U|530
6FEC|1|A|U|531
6FEC|1|A|U|532
6FEC|1|A|C|533
6FEC|1|A|G|534

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain u

Eukaryotic translation initiation factor 4B