HL_6FEC_033

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_033 not in the Motif Atlas

Homologous match to HL_4V88_218

Geometric discrepancy: 0.2256

The information below is about HL_4V88_218

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6FEC|1|A|C|1560
6FEC|1|A|G|1561
6FEC|1|A|G|1562
6FEC|1|A|C|1563
6FEC|1|A|A|1564
6FEC|1|A|G|1565

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein S18

Chain R

40S ribosomal protein S19

Chain n

40S ribosomal protein S15