HL_6FEC_038

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CGCAGCGGAAGCG

Length

13 nucleotides

Bulged bases

6FEC|1|N|G|17, 6FEC|1|N|G|18, 6FEC|1|N|A|19, 6FEC|1|N|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FEC_038 not in the Motif Atlas

Homologous match to HL_4V9I_038

Geometric discrepancy: 0.5347

The information below is about HL_4V9I_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68572.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6FEC|1|N|C|11
6FEC|1|N|G|12
6FEC|1|N|C|13
6FEC|1|N|A|14
6FEC|1|N|G|15
6FEC|1|N|C|16
6FEC|1|N|G|17
6FEC|1|N|G|18
6FEC|1|N|A|19
6FEC|1|N|A|20
6FEC|1|N|G|21
6FEC|1|N|C|22
6FEC|1|N|G|23

Current chains

Chain N

Transfer RNA (75-MER)

Nearby chains

Chain P

Eukaryotic translation initiation factor 2 subunit 1