HL_6FEC_045
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FEC_045 not in the Motif Atlas
- Homologous match to HL_8CRE_210
- Geometric discrepancy: 0.277
- The information below is about HL_8CRE_210
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6FEC|1|A|A|953
6FEC|1|A|G|954
6FEC|1|A|G|955
6FEC|1|A|U|956
6FEC|1|A|G|957
6FEC|1|A|A|958
6FEC|1|A|A|959
6FEC|1|A|A|960
6FEC|1|A|U|961
6FEC|1|A|U|962
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain U
- 40S ribosomal protein S5
- Chain j
- 40S ribosomal protein S14
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