HL_6FF4_004
3D structure
- PDB id
- 6FF4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human Bact spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 6FF4|1|6|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6FF4_004 not in the Motif Atlas
- Homologous match to HL_6ASO_001
- Geometric discrepancy: 0.4172
- The information below is about HL_6ASO_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
6FF4|1|6|U|64
6FF4|1|6|G|65
6FF4|1|6|C|66
6FF4|1|6|G|67
6FF4|1|6|C|68
6FF4|1|6|A|69
6FF4|1|6|A|70
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain 7
- Splicing factor 3A subunit 2
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain D
- Pleiotropic regulator 1
- Chain R
- Spliceosome-associated protein CWC15 homolog
- Chain Z
- pre mRNA
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