HL_6FKR_167

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

6FKR|1|2A|G|2751, 6FKR|1|2A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_167 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.099

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

6FKR|1|2A|C|2745
6FKR|1|2A|U|2746
6FKR|1|2A|G|2747
6FKR|1|2A|A|2748
6FKR|1|2A|A|2749
6FKR|1|2A|A|2750
6FKR|1|2A|G|2751
6FKR|1|2A|C|2752
6FKR|1|2A|A|2753
6FKR|1|2A|U|2754
6FKR|1|2A|C|2755
6FKR|1|2A|U|2756
6FKR|1|2A|A|2757
6FKR|1|2A|A|2758
6FKR|1|2A|G|2759

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13