HL_6FKR_189

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUUAGAUACC

Length

11 nucleotides

Bulged bases

6FKR|1|2a|U|793

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FKR_189 not in the Motif Atlas

Homologous match to HL_4LFB_017

Geometric discrepancy: 0.1067

The information below is about HL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6FKR|1|2a|G|786
6FKR|1|2a|A|787
6FKR|1|2a|U|788
6FKR|1|2a|U|789
6FKR|1|2a|A|790
6FKR|1|2a|G|791
6FKR|1|2a|A|792
6FKR|1|2a|U|793
6FKR|1|2a|A|794
6FKR|1|2a|C|795
6FKR|1|2a|C|796

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11

Chain 2z

Ribosome-associated inhibitor A