3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUUGGGAAUG
Length
10 nucleotides
Bulged bases
6FRK|1|5|A|295, 6FRK|1|5|A|296
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6FRK_015 not in the Motif Atlas
Homologous match to HL_8C3A_008
Geometric discrepancy: 0.2151
The information below is about HL_8C3A_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

6FRK|1|5|C|289
6FRK|1|5|U|290
6FRK|1|5|U|291
6FRK|1|5|G|292
6FRK|1|5|G|293
6FRK|1|5|G|294
6FRK|1|5|A|295
6FRK|1|5|A|296
6FRK|1|5|U|297
6FRK|1|5|G|298

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain L
Ribosomal protein eL13
Chain N
Ribosomal protein L15
Chain a
Ribosomal protein uL15
Chain o
Ribosomal protein eL42

Coloring options:


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