HL_6FRK_030

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

6FRK|1|5|C|1676, 6FRK|1|5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_030 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.2691

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

6FRK|1|5|C|1675
6FRK|1|5|C|1676
6FRK|1|5|U|1677
6FRK|1|5|C|1678
6FRK|1|5|A|1679
6FRK|1|5|G|1680

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain a

Ribosomal protein uL15

Chain b

60S ribosomal protein L29

Chain o

Ribosomal protein eL42