HL_6FRK_059

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

6FRK|1|5|A|3876, 6FRK|1|5|A|3877, 6FRK|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_059 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0861

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|G|3873
6FRK|1|5|G|3874
6FRK|1|5|G|3875
6FRK|1|5|A|3876
6FRK|1|5|A|3877
6FRK|1|5|C|3878
6FRK|1|5|G|3879
6FRK|1|5|G|3880
6FRK|1|5|G|3881
6FRK|1|5|C|3882

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain e

Ribosomal protein eL32