HL_6FRK_070

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6FRK|1|5|U|4419

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FRK_070 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.1685

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|C|4417
6FRK|1|5|G|4418
6FRK|1|5|U|4419
6FRK|1|5|U|4420
6FRK|1|5|C|4421
6FRK|1|5|A|4422
6FRK|1|5|U|4423
6FRK|1|5|A|4424
6FRK|1|5|G|4425

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16

Chain m

Ribosomal protein eL40