HL_6FT6_028

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FT6_028 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.222

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

6FT6|1|1|U|1267
6FT6|1|1|G|1268
6FT6|1|1|U|1269
6FT6|1|1|A|1270
6FT6|1|1|A|1271
6FT6|1|1|C|1272
6FT6|1|1|A|1273
6FT6|1|1|A|1274

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2