HL_6FT6_078

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

6FT6|1|1|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FT6_078 not in the Motif Atlas

Homologous match to HL_8P9A_173

Geometric discrepancy: 0.2322

The information below is about HL_8P9A_173

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6FT6|1|1|A|2897
6FT6|1|1|G|2898
6FT6|1|1|C|2899
6FT6|1|1|A|2900
6FT6|1|1|G|2901
6FT6|1|1|A|2902
6FT6|1|1|A|2903
6FT6|1|1|U|2904

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain b

Nucleolar GTP-binding protein 1

Chain r

Ribosome biogenesis protein NSA2