HL_6FTG_012

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_012 not in the Motif Atlas

Geometric match to HL_4W90_003

Geometric discrepancy: 0.1438

The information below is about HL_4W90_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

6FTG|1|u|G|1178
6FTG|1|u|U|1179
6FTG|1|u|C|1180
6FTG|1|u|C|1181
6FTG|1|u|C|1182
6FTG|1|u|C|1183

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5