HL_6FTG_014

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

6FTG|1|u|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_014 not in the Motif Atlas

Homologous match to HL_5TBW_014

Geometric discrepancy: 0.0819

The information below is about HL_5TBW_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

6FTG|1|u|U|1317
6FTG|1|u|C|1318
6FTG|1|u|U|1319
6FTG|1|u|U|1320
6FTG|1|u|G|1321
6FTG|1|u|A|1322
6FTG|1|u|A|1323
6FTG|1|u|A|1324
6FTG|1|u|C|1325
6FTG|1|u|A|1326

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain a

uL15

Chain e

eL32