HL_6FTG_018

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

6FTG|1|u|C|1439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.2626

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

6FTG|1|u|C|1436
6FTG|1|u|C|1437
6FTG|1|u|U|1438
6FTG|1|u|C|1439
6FTG|1|u|U|1440
6FTG|1|u|C|1441
6FTG|1|u|C|1442
6FTG|1|u|A|1443
6FTG|1|u|G|1444
6FTG|1|u|U|1445
6FTG|1|u|C|1446
6FTG|1|u|C|1447
6FTG|1|u|G|1448

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein L4

Chain F

uL30

Chain Q

uL14