HL_6FTG_022

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

6FTG|1|u|A|1630, 6FTG|1|u|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6FTG_022 not in the Motif Atlas

Homologous match to HL_5TBW_021

Geometric discrepancy: 0.0979

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|G|1627
6FTG|1|u|C|1628
6FTG|1|u|G|1629
6FTG|1|u|A|1630
6FTG|1|u|A|1631
6FTG|1|u|A|1632
6FTG|1|u|G|1633
6FTG|1|u|A|1634
6FTG|1|u|C|1635

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37